Journal of Machine and Computing


Bayesian Network Meta Analysis of Survival Data Using a Near Ignorance Dirichlet Process with Pseudo IPD



Journal of Machine and Computing

Received On : 23 May 2024

Revised On : 26 October 2024

Accepted On : 10 March 2025

Published On : 05 April 2025

Volume 05, Issue 02

Pages : 1113-1123


Abstract


Among the few approved therapies for advanced renal cell cancer, Sunitinib is a common active comparator in most trials. The pembrolizumab-plus-axitinib and nivolumab-plus-cabozantinib combination therapies have shown better efficacy compared to Sunitinib in different studies but there is no direct head-to-head study between the two combination therapies. Network Meta Analysis is employed to compare the treatments indirectly. Usually, the aggregate Hazard ratio-based approach and endpoints are used in Network Meta Analysis. Matching Adjusted Indirect Comparison has been reported for checking these two sets of combination therapies. Proportionality assumption violation is an issue with using Cox proportional hazard ratio while Matching Adjusted Indirect Comparison is not free of bias. We therefore employ pseudo-Individual patient level data generated from digitized survival curves and apply a new prior near-ignorance Dirichlet Process. We then compare the results of cox-regression based method and a Bayesian approach based on near ignorance imprecise prior Dirichlet Process with Pseudo-IPD based Network Meta Analysis. Based on both the Cox-regression and pseudo-IPD based-approaches, there is no statistically significant difference between the two groups based on efficacy. Both the combination therapies perform significantly better than Sunitinib arm in term of efficacy when using the Overall Survival and Progression Free Survival endpoints. Since the Bayesian prior near-ignorance Dirichlet Process based method does not assume proportionality, it is a better choice. In the current work, a R software-based analysis is done with an example dataset to compare and present the results from the two methods.


Keywords


Dirichlet Process, Network Meta Analysis, Restricted Mean Survival Time, Progression Free Survival, Matching Adjusted Indirect Comparison, Pseudo-Individual Patient Data.


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CRediT Author Statement


The authors confirm contribution to the paper as follows:

Conceptualization: Amritendu Bhattacharya, Ravilisetty Revathi and Boya Venkatesu; Methodology: Amritendu Bhattacharya and Ravilisetty Revathi; Software: Ravilisetty Revathi and Boya Venkatesu; Data Curation: Amritendu Bhattacharya and Ravilisetty Revathi; Writing- Original Draft Preparation: Amritendu Bhattacharya, Ravilisetty Revathi and Boya Venkatesu; Visualization: Ravilisetty Revathi and Boya Venkatesu; Investigation: Amritendu Bhattacharya and Ravilisetty Revathi; Supervision: Ravilisetty Revathi and Boya Venkatesu; Validation: Ravilisetty Revathi; Writing- Reviewing and Editing: Amritendu Bhattacharya, Ravilisetty Revathi and Boya Venkatesu; All authors reviewed the results and approved the final version of the manuscript.


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The authors would like to thank to the reviewers for nice comments on the manuscript.


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Amritendu Bhattacharya, Ravilisetty Revathi and Boya Venkatesu, “Bayesian Network Meta Analysis of Survival Data Using a Near Ignorance Dirichlet Process with Pseudo IPD”, Journal of Machine and Computing, pp. 1113-1123, April 2025, doi: 10.53759/7669/jmc202505088.


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© 2025 Amritendu Bhattacharya, Ravilisetty Revathi and Boya Venkatesu. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.